rs47478945 SNP Detail

Summary

• ID
  rs47478945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:143823127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCATGGCTG CCAGGACGGG TGAACAGGCG AAAGGTGAAA
  GAGGAAGGGA GCAACTGCAG CCCAGCCAAT GGTTTTAAAG AAAGAGCTCT GATCTGCTCT
  R
  TACACCCTGA ATAGGTTTTC CTGGAAGCTC TGATAACCCT TCTTTATCTC TTCTGTCTCA
  TGCCCCTGTC AAGTTACAGC TCTTTTTACA CTGCATTTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147777007	ENSMUSSNP2127922	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47478945					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:143823127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr373991	regulatory region 373991			760 bp upstream
Rr566349	regulatory region 566349			within coordinates
Rr566350	regulatory region 566350			214 bp distal
Rr566351	regulatory region 566351			985 bp proximal
Rr566352	regulatory region 566352			1804 bp proximal
Rrbp1	ribosome binding protein 1			Intron
				Noncoding-Transcript-Variant
Tssr26572	transcription start site region 26572			1957 bp downstream