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rs47478945 SNP Detail
Summary
  • ID
    rs47478945
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:143823127 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          AGCATGGCTG CCAGGACGGG TGAACAGGCG AAAGGTGAAA
    GAGGAAGGGA GCAACTGCAG CCCAGCCAAT GGTTTTAAAG AAAGAGCTCT GATCTGCTCT
    R
    TACACCCTGA ATAGGTTTTC CTGGAAGCTC TGATAACCCT TCTTTATCTC TTCTGTCTCA
    TGCCCCTGTC AAGTTACAGC TCTTTTTACA CTGCATTTC                       
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss147777007 ENSMUSSNP2127922 ENSEMBL ENSEMBL_Sanger f SNP A G A
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs47478945 SNP A G A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:143823127 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr373991 regulatory region 373991 760 bp upstream
Rr566349 regulatory region 566349 within coordinates
Rr566350 regulatory region 566350 214 bp distal
Rr566351 regulatory region 566351 985 bp proximal
Rr566352 regulatory region 566352 1804 bp proximal
Rrbp1 ribosome binding protein 1 Intron
Noncoding-Transcript-Variant
Tssr26572 transcription start site region 26572 1957 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory