rs47478198 SNP Detail

Summary

• ID
  rs47478198
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78501739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAAA TACATAACCC AGGACACTGA
  M
  TCTGCCTTAA GTGTTCAGTA TGGGC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135359196	ENSMUSSNP7128890	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320807535	CHEV_3_78398354	CHEVERUD	SCREENING_POP	f	SNP			A	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47478198					SNP	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78501739 () rs orientation: forward

Symbol	Name	Function Class
Gm65533	predicted gene, 65533	within coordinates
Rr578423	regulatory region 578423	85 bp proximal
Rr578424	regulatory region 578424	504 bp proximal
Tssr33603	transcription start site region 33603	67 bp upstream
Tssr33604	transcription start site region 33604	13 bp upstream
Tssr33605	transcription start site region 33605	within coordinates
Tssr33606	transcription start site region 33606	5 bp downstream
Tssr33607	transcription start site region 33607	81 bp downstream
Tssr33608	transcription start site region 33608	139 bp downstream