rs47474996 SNP Detail

Summary

• ID
  rs47474996
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:119542362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCAATGC TGAGCACAGC TCCCACACCC GTGGAAGAGG
  CGCCTTGTCT TTTGAGGTGA ATAGAGACAG AATGGGAGCC TACAGAGGTG ACGTGTCCCG
  M
  TCTGGCAGGC CTGCTGACTG TCTTTCCTGC TCTTTAGGCA ATTGTTCCAT GGGTGATTTG
  GGCCTGTTCT GTGTCTCCCT TACCTTGCTG TAAGTCCTT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133591040	ENSMUSSNP2466295	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321928723	CHEV_6_119515419	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47474996					SNP	A	A	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:119542362 () rs orientation: forward

Symbol	Name	Function Class
Gm44317	predicted gene, 44317	823 bp upstream
Rr637714	regulatory region 637714	1723 bp distal
Rr637715	regulatory region 637715	119 bp proximal