rs47474953 SNP Detail

Summary

• ID
  rs47474953
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:94565633 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCGC CATCACAGAA GTCTTTGAAG
  R
  GGTTCTGAGG CCATCGGGAA ACGCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135506923	ENSMUSSNP3942495	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320840506	CHEV_3_94462248	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47474953					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:94565633 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13486	CpG island 13486	within coordinates
Gm15234	predicted gene 15234	402 bp upstream
Gm65306	predicted gene, 65306	within coordinates
Rr580673	regulatory region 580673	within coordinates
Rr580674	regulatory region 580674	62 bp proximal
Rr580675	regulatory region 580675	464 bp proximal
Rr580676	regulatory region 580676	536 bp proximal
Rr580677	regulatory region 580677	640 bp proximal
Tssr34401	transcription start site region 34401	517 bp downstream
Tuft1	tuftelin 1	Intron