rs47473875 SNP Detail

Summary

• ID
  rs47473875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117655065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAGATTG GAGAGCAGAG
  AAGTCAGAAT TAACAGCACT CTGTTTTCCA GGCAATCTTC TGGGAAGGTC TGGGAAGCAG
  GACTAGGATC CAGAGTGGCA GGGCTCATGC TGAATGGTTT GTATCCTACA TTCCAGCCCT
  TGCCAAGCTG AACAGGCTGC CCACAGAACT GCCTGTGTTA CACTTGGACT TCTGCTCCCA
  Y
  AGACAAAGGT GCTCTGAGAA AAAAGACACC CTGGCTCTAC CTCTAATGCT GCTTGCTGCC
  TGACCCTGCC CCACAGAACT CACATGTTTT CTTTGTGGCT TTTTTGCTGG GTTATAGAGT
  CTGGGATCCC CTGCCCCTGT TTCTTGTAGA TACAAAGCAG ACTTTTAAGC ATCCTTCTGT
  TTCCTGTAGA GAGGGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60933650	NES16203060	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		T	T	T	T		C
ss321923009	CHEV_6_117628122	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47473875					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60933650	NES16203060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117655065 () rs orientation: forward

Symbol	Name	Function Class
1700030F04Rik	RIKEN cDNA 1700030F04 gene	1103 bp downstream
Rr637351	regulatory region 637351	1257 bp distal
Rr637352	regulatory region 637352	640 bp distal
Rr637353	regulatory region 637353	207 bp proximal