rs47471515 SNP Detail

Summary

• ID
  rs47471515
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:143007304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACAACAACAA TAATACAGCT GAGTATGGTG ATACACACCT
  GTAACCCCGG TCGGTGCTGG TGGAGGGAAG AGAGAGGGTT GCTAGAGCTT ACTGGCCAGC
  Y
  CGTCTAACAG AACTGGAGTA GTCAGTGAGA TACCCTGCCT CAAAAATAGA TGGAAAGTGA
  CTGAGAAGAA AATAGACAAT ATCAGCCTTA TATATGGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147778650	ENSMUSSNP2009710	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47471515					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:143007304 () rs orientation: forward

Symbol	Name	Function Class
Pdpn	podoplanin	Intron
Rr604183	regulatory region 604183	1429 bp distal
Rr604184	regulatory region 604184	242 bp distal
Rr604185	regulatory region 604185	332 bp distal
Tssr44446	transcription start site region 44446	1819 bp upstream