rs47471115 SNP Detail

Summary

• ID
  rs47471115
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38866088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACTGTTTC CCCTTTCAGT
  CTGACAAAGG AGAACACAGA CTGTGGTGAA CCCTGATTCA GACTTCATTC TGCCTCCAGA
  GTGACTGAGT GCCGGTAGCG CCCCCTGATG GAGAGGCAGA ACTCAGCATG GCAAGCAATT
  GGCATTAACT TTCCGTGGCA TATGCAGAAT TAACACTGCA CCGAAACCTT TTTGGTTGGA
  K
  GACAACACAA ACCCTTCGTT TTTGTACAGA TAGCTTAAAT CCTACTCACA TAAATACACA
  TCATATATAT TTCTTTCCTA GCTGTAGGAG TAGCCCTGAA AGGTAGCTTT ATTTGGTAAA
  CCATCATTTT TGCCAGTTGA AGACATCTGG TCAGGTGTAT TTTAAGAACC CGATAGCTGC
  ATTGATTTTT CTCTGAGTGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss60388575	NES15898507	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs47471115					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60388575	NES15898507	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38866088 () rs orientation: forward

Symbol	Name	Function Class
Gm54204	predicted gene, 54204	within coordinates
Rr575706	regulatory region 575706	85 bp distal