rs47470070 SNP Detail

Summary

• ID
  rs47470070
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135621859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGTGCATA CACACATGCA
  GGCAAAACAC TCACTCACAT GCCTATATGT ACATGCATGC ACACACATGC ACACTCACAT
  GCACACGTGC ACACACGAGC ATCCACAGGC ACATGCACAC ATGCTTGTGT GCACATACCA
  GGCATGGTGA AGAATACTAT AATCCCAACA CTGGGTAGAT GGAGACAGCC AGCCTAGCCT
  A
  GCGGGTGAAT CCTGGGTTCC AGTGAGAGAC CTTGCAGCAA AACTCAAGGT AGATCTAGGA
  GGATACAAGC TGGCATTCAA CTGAGCCAGC AACTGGCCCC CTCCACAGTT CTTGCTATGT
  CTTCATAGCA AATTCCTCTG TTAGAGGTAA TGCTGTGTGG AATGGTGTCT TAGCTAGGGT
  TTCGTTGCTA TGAAGAGACA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss147553132	ENSMUSSNP5058198	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs47470070					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135621859 () rs orientation: forward

Symbol	Name	Function Class
Cnr2	cannabinoid receptor 2	846 bp upstream
Rr602181	regulatory region 602181	1399 bp distal
Rr602182	regulatory region 602182	1083 bp distal
Rr602183	regulatory region 602183	443 bp proximal
Rr602184	regulatory region 602184	857 bp proximal
Rr602185	regulatory region 602185	1423 bp proximal
Tssr39650	transcription start site region 39650	632 bp upstream
Tssr39651	transcription start site region 39651	836 bp upstream
Tssr39652	transcription start site region 39652	866 bp upstream