rs47463201 SNP Detail

Summary

• ID
  rs47463201
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:43479127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTAGACCA GGCAGGCCTA
  GAACTCAGAA ATCCACCTGC CTCTGCCTTC CGAGTGCTGG GATTGCTGGG ATTAAAGGCG
  TGCGCCACCA TGCCCGGCTT GCTTTCTCTT TCTTATGTCC TTCAAACACC AAAAAGGTTG
  GTGGCGCTGG AGCTCAGGCT GAAGGCGATT TCTTCCCCCC TCCCCCCTCC GTTCTGCTAT
  G
  GGATGCTGGA GCTAAGAAGG AGTTGGACTT TTTTCCAGAG TGGGGTGGAT CACAGATGGG
  CTACAGAAAA GTTGGAGGAT TGGTGCAAGG ATTGGTTAAA CAGAGCAGTG TGTTGCCACC
  GGGAGAGTTG GCGAAAGCTT GAACAGTATA GAACTGGGCT ATATTCTGTG ATGGGACCAC
  AAAGATGGGT GTATAGTGGA                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146240239	ENSMUSSNP504640	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47463201					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:43479127 () rs orientation: forward

Symbol	Name	Function Class
Gm70652	predicted gene, 70652	311 bp upstream
Rr398231	regulatory region 398231	578 bp downstream
Rr590996	regulatory region 590996	350 bp distal
Rr590997	regulatory region 590997	737 bp distal
Rr590998	regulatory region 590998	221 bp distal
Rr590999	regulatory region 590999	within coordinates
Rr591000	regulatory region 591000	50 bp distal
Rr591001	regulatory region 591001	540 bp proximal
Rr591002	regulatory region 591002	1076 bp proximal
Rr591003	regulatory region 591003	1795 bp proximal
Tssr41421	transcription start site region 41421	316 bp upstream