rs47462970 SNP Detail

Summary

• ID
  rs47462970
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:139517158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAAGGAAAGG AAAAAAAAGA GTCTTTTTCA GGAAAGCTAG
  AGTTAAACTC ACACCTACTT GCAACTTGAC AAAACTTCCT GAGCTAGGAA GTCACACTTA
  M
  TTTCTTCAGG TTGTACTGTT AAATTCTGAT CCTTGGAGAG ATCACCTGTA TCAGAGAATA
  TGGGGTCCAT GTCCGGTATT TAGAGCATGA GCCTGTGCTA A                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147681670	ENSMUSSNP3989600	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47462970					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139517158 () rs orientation: forward

Symbol	Name	Function Class
Pax7	paired box 7	Intron
Rr603302	regulatory region 603302	29 bp proximal
Rr603303	regulatory region 603303	118 bp proximal
Rr603304	regulatory region 603304	1361 bp proximal