rs47461088 SNP Detail

Summary

• ID
  rs47461088
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102181952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGGAACCA TACCTGGGAA
  GAGGGCATCT CACCTGAGGA ATTGTCTCCA TTAGTGGGCT TGTAGGAATG TCCGTGGGGT
  ATTTTCTTGA TTAATGATTG ATCCACACTA GAAGGCCCGG CCCACCATGG GTTGTGCAAT
  TCTTAGGCAG GTAGCTTAGA AAGTAGATGA ACAATCCGAT AAGCTTCTCA CCTCTGTGCT
  K
  TCTGCTTCAG TTTCTGCCTC TAGGTCCAGG TTTCTGCTTT GAGTTCCTAG CCTGACTTCT
  CTGAATGATT GACTATGGCA TCGAAGCACA AGCCAAATCA AACCTTTCCT CCCCAGGCTG
  CTTTTGGTTA AACGTTTTAT CAAGGGAGTA GAAAATAAAC ATAAGACCCA TTGCTTGCTG
  CCTAATTGAT GTAGATTGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss135555700	ENSMUSSNP4159719	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss320855298	CHEV_3_102078559	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47461088					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102181952 () rs orientation: forward

Symbol	Name	Function Class
A230001M10Rik	RIKEN cDNA A230001M10 gene	within coordinates
Gm65464	predicted gene, 65464	within coordinates
Rr582219	regulatory region 582219	618 bp proximal
Rr582220	regulatory region 582220	1098 bp proximal
Rr582221	regulatory region 582221	1353 bp proximal