rs47458354 SNP Detail

Summary

• ID
  rs47458354
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:117692768 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCTGTT TATACTTCGG
  AGATCACTGA TGCTACACTC ACTAAGGTTG GAACTTTTTC CACTGAGCTT ACATTACTAT
  AACAGTCTTC CTTCTGTGAC TCCAGGCACA GGGTCCTCTC CATACCCAGG GCATCCAGGA
  GGCTGAACCT GGCCATAGAG ACCCAGTTGT AAATGCATTT CTCCTCTGGA TCCTTAAGTC
  Y
  AAGGCTGGCA GCAGAGGTAT GGATGCTGGT CACAGGATCC CTCCATCCCA GGTCTGGAGA
  TTCTCCAACC TTATTACTCA GTGTACATGT GAGTGATGAC CTGCCAGGCA GCTAGATGCC
  CTGGCCGAGA TGGTGGCCTG GTCAGTGTCA GGCAAGAGAA CTGAGTTAAC TGGGACAAAG
  CTCTGGATGT GAACCCAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60933469	NES16202165	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47458354					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60933469	NES16202165	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117692768 () rs orientation: forward

Symbol	Name	Function Class
1700030F04Rik	RIKEN cDNA 1700030F04 gene	within coordinates
Gm7292	predicted gene 7292	535 bp upstream
Rr637356	regulatory region 637356	445 bp proximal
Rr637357	regulatory region 637357	715 bp proximal
Tssr58446	transcription start site region 58446	533 bp upstream