rs47455997 SNP Detail

Summary

• ID
  rs47455997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127762968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATCAAGCT GGCAGTGAAG
  ACGATCCACC ACACATTTAG GATCAAGTTA TTTCTGTGCC GAACGCAGGC AGATTTTTAA
  GATCTTGTCA TTATCTTTTT AATCATACCA GTATGAAAAC CATTTACAGG AGTTTATGTT
  AGGTGTTGTA ACGGACCCAG AGATGGTTTA AATATACACA GACATGGCTT TTACCTGTAG
  Y
  CAAGCACTTA GTAGGCTGAG GCAGGAGAAT TGCTATGAGT TTGATCTAGC CTGGGCTATA
  TAGTGAGTTC CAGGCTAACA TGGGCTACAG AGTGAGACCT TGTCTCAAAA AAAATTATTA
  TCCTAAATAA AAGAATTAAG AAGTGTCTGG GGAGTGGGGG GCTGGACTCC AGATGCCCCC
  ATCTTGACAC TGGACTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135876653	ENSMUSSNP2605876	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320958789	CHEV_3_127672237	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47455997					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127762968 () rs orientation: forward

Symbol	Name	Function Class
Gm35667	predicted gene, 35667	1602 bp upstream
Gm65460	predicted gene, 65460	200 bp upstream
Rr52	regulatory region 52	662 bp proximal
Rr584913	regulatory region 584913	1655 bp proximal
Rr584914	regulatory region 584914	1755 bp proximal