rs47453557 SNP Detail

Summary

• ID
  rs47453557
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:166493611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCAAACATCA CTACTCAATC ACCTATTTTT CCTGTTCTGC
  CATAGCTCTA GGGACCTTGA ATACTTGTGC ATCAAGAGCT CTGCTTCCTA GAGCCTCCAC
  Y
  TCTCGTCCTA TCGCCCAGAA GGTAAGGGTC CACCTCCCCA CATGGCACGA GGTGTAGGTG
  ACTCCACAAG GTGACTTGTG CCACAGCTGT CTCTCCTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148257537	ENSMUSSNP6563225	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47453557					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166493611 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Prex1	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1			Intron
				Noncoding-Transcript-Variant
Rr570327	regulatory region 570327			844 bp distal
Rr570328	regulatory region 570328			within coordinates
Rr570329	regulatory region 570329			157 bp distal
Rr570330	regulatory region 570330			1092 bp proximal
Rr570331	regulatory region 570331			1711 bp proximal