rs47452154 SNP Detail

Summary

• ID
  rs47452154
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117149778 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAA TAACCAGAGC TAAGCTCACC
  R
  GTTCATCTGC CCATTAGGAA GTTCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60932513	NES16191112	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	A	G		A	G	G	A		G
ss321921052	CHEV_6_117122835	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47452154					SNP	G	G	G	G	G	G	A	G	A	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932513	NES16191112	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117149778 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	149 bp distal
Rr637289	regulatory region 637289	1049 bp proximal
Rr637290	regulatory region 637290	1234 bp proximal
Rr637291	regulatory region 637291	1285 bp proximal
Tssr58392	transcription start site region 58392	1330 bp downstream
Tssr58393	transcription start site region 58393	1311 bp downstream
Tssr58394	transcription start site region 58394	1271 bp downstream
Tssr58395	transcription start site region 58395	675 bp upstream
Tssr58396	transcription start site region 58396	691 bp upstream
Tssr58397	transcription start site region 58397	729 bp upstream
Tssr58398	transcription start site region 58398	755 bp upstream
Tssr58399	transcription start site region 58399	777 bp upstream
Tssr58400	transcription start site region 58400	805 bp upstream
Tssr58401	transcription start site region 58401	841 bp upstream
Tssr58402	transcription start site region 58402	872 bp upstream
Tssr58403	transcription start site region 58403	890 bp upstream
Tssr58404	transcription start site region 58404	909 bp upstream
Tssr58405	transcription start site region 58405	951 bp upstream
Tssr58406	transcription start site region 58406	981 bp upstream
Tssr58407	transcription start site region 58407	1012 bp upstream
Tssr58408	transcription start site region 58408	1079 bp upstream
Tssr58409	transcription start site region 58409	1101 bp upstream
Tssr58410	transcription start site region 58410	1123 bp upstream
Tssr58411	transcription start site region 58411	1139 bp upstream
Tssr58412	transcription start site region 58412	1166 bp upstream
Tssr58413	transcription start site region 58413	1179 bp upstream
Tssr58414	transcription start site region 58414	1212 bp upstream
Tssr58415	transcription start site region 58415	1227 bp upstream
Tssr58416	transcription start site region 58416	1242 bp upstream
Tssr58417	transcription start site region 58417	1296 bp upstream
Tssr58418	transcription start site region 58418	1329 bp upstream
Tssr58419	transcription start site region 58419	1348 bp upstream
Tssr58420	transcription start site region 58420	1375 bp upstream
Tssr58421	transcription start site region 58421	1394 bp upstream
Tssr58422	transcription start site region 58422	1420 bp upstream
Tssr58423	transcription start site region 58423	1428 bp upstream
Tssr58424	transcription start site region 58424	1490 bp upstream
Tssr58425	transcription start site region 58425	1535 bp upstream
Tssr58426	transcription start site region 58426	1557 bp upstream
Tssr58427	transcription start site region 58427	1584 bp upstream
Tssr58428	transcription start site region 58428	1599 bp upstream
Tssr58429	transcription start site region 58429	1664 bp upstream
Tssr58430	transcription start site region 58430	1709 bp upstream
Tssr58431	transcription start site region 58431	1805 bp upstream
Tssr58432	transcription start site region 58432	1878 bp upstream
Tssr58433	transcription start site region 58433	1914 bp upstream
Tssr62617	transcription start site region 62617	739 bp downstream
Tssr62618	transcription start site region 62618	761 bp downstream
Tssr62619	transcription start site region 62619	797 bp downstream
Tssr62620	transcription start site region 62620	840 bp downstream
Tssr62621	transcription start site region 62621	906 bp downstream
Tssr62622	transcription start site region 62622	1458 bp downstream
Tssr62623	transcription start site region 62623	1476 bp downstream
Tssr62624	transcription start site region 62624	1591 bp downstream
Tssr62625	transcription start site region 62625	1742 bp downstream
Tssr62626	transcription start site region 62626	1838 bp downstream
Tssr62627	transcription start site region 62627	1869 bp downstream