rs47448047 SNP Detail

Summary

• ID
  rs47448047
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127374500 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCAGACACG ATAGGGCGCG CTCAGGGTGC TATGGCCGTA
  GACCCAGTGC AAATCAGACA CGATAGGGCG CGCTCAGGGT GCTATGGCCG TAGACCCAGT
  S
  CAAATCAGAC ACGATAGGGC GCGCTCAGGG TGCTATGGCC GTAGACCCAG TGCAAATCAG
  ACACGATAGG GCGCGCTCAG GGTGCTATGG CCGTAGACCC                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61078931	NES16597487	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C	C	G	G		G	G	G	C	C
ss61078933	NES16597484	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C	C	G	G	G	G		G	C	C
ss61078935	NES16597479	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C	C	G	G		G		G	C	C
ss61078937	NES16597474	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C	C	G	G	C	G	G	G	C
ss61078939	NES16597469	PERLEGEN	MM_PANEL2	f	SNP	C	C		C	G	C	C	G			G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47448047					SNP	C	C	G	C	G	C	C	G	G	?	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61078931	NES16597487	PERLEGEN	MM_PANEL	f	SNP	C/G
ss61078933	NES16597484	PERLEGEN	MM_PANEL	f	SNP	C/G
ss61078935	NES16597479	PERLEGEN	MM_PANEL	f	SNP	C/G
ss61078937	NES16597474	PERLEGEN	MM_PANEL	f	SNP	C/G
ss61078939	NES16597469	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127374500 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Zgrf1	zinc finger, GRF-type containing 1			Intron
				Noncoding-Transcript-Variant