rs47447087 SNP Detail

Summary

• ID
  rs47447087
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127740811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTGTGT GTGTGCGTGC
  GCGCGTGTGC ATGCCTGCGT GCGCATGCGT GCGTGCATGT GTGTGTGACA GCTTCCAAGT
  TCCTTTTCCC ACAGTCCCTT AAGCTTACAT AAATGCTCTC AAAAATCATC CCCAAGCAAA
  CAGTGATAGA ATAAACAGTG TTTCAGGGCT TCTCTCCTTC ACTGAAGGGC TAGCGAAAGA
  R
  TTCTGGGAAG TCTTCCTCTC TAGAGGGTTC AGTGCCAATG GCCTTTGAGT ATAAACAGTA
  CTAAGTTTAG AATTTGTGTA TATCTCAACT TAACCTCAGC TCATGGTTAT CACAACAAAG
  AACTCCGATA CATGGTTTCT ACTCCTTAGA ACTCTCCATA GCTTTGAATG TTACATCCTG
  CCTATCTTCG TGAAGTATAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320958535	CHEV_3_127650080	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs47447087					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127740811 () rs orientation: forward

Symbol	Name	Function Class
9830132P13Rik	RIKEN cDNA 9830132P13 gene	within coordinates
Rr398010	regulatory region 398010	1859 bp upstream
Rr584909	regulatory region 584909	1272 bp proximal
Rr584910	regulatory region 584910	1711 bp proximal
Rr584911	regulatory region 584911	1938 bp proximal