rs47446494 SNP Detail

Summary

• ID
  rs47446494
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:148685921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGAAAGC ACAACTAGCC
  CGGTATTTTA TTCCCCACCA CAGAAGCCCA GGGTATCTTA ACTCTAGGCT ATAATTTCTA
  TTTGTTGACA CAATGAAGTA GTTTTGTATC GTATCCATCT TTTTGTAAAC ATACACAGCC
  TATCAGTCTC CAGTGTGCCT TGTGTCGATT CACAGGAAGC CTTCAGCAAG CACCTGGCAA
  S
  GAATGGCTGG AACATGGGAC CAGAATCCAG CACTACCAAA GGATAGTCCC AACAGCCACA
  AGAAAACTGA GGACTTTAGG AACGAAAACA ACTTTAAGGA TCGAAAAATG AGGAGGGCAA
  GGAAGAAGCT GGGGATGGGA CAATAGGGAG AGCCTTGCTT AGTAGCAACT AGAAGGCTCA
  ATTCCTAGCA CTGAGGGAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136065922	ENSMUSSNP7087250	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
ss321017015	CHEV_3_148643249	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47446494					SNP	G	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:148685921 () rs orientation: forward

Symbol	Name	Function Class
Adgrl2	adhesion G protein-coupled receptor L2	Intron
Rr587237	regulatory region 587237	1366 bp distal
Rr587238	regulatory region 587238	1596 bp distal
Rr587239	regulatory region 587239	1553 bp proximal