rs47443305 SNP Detail

Summary

• ID
  rs47443305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77036625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCTGCTAAA GTGATTTCCT TTCTCTCTTT CTTTCTTTCC
  TTCCAGTTTG CAGCTTGAGG ATGGAAAAAC AATGGGAAAG AAAAAAAGCT GCTGTTGAGA
  Y
  CGTCCAGTGT GGACTCTGCA AGCAGGCGAG ACAACATGGC GGGAGGAGGG CATACAGACA
  GGAGGTGAAG GAGGGAGTGG AGGAGTAGAG AGTAAATCAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373243	NES15266637	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47443305					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373243	NES15266637	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77036625 () rs orientation: forward

Symbol	Name	Function Class
Gm67806	predicted gene, 67806	within coordinates
Rr384958	regulatory region 384958	within coordinates
Rr434428	regulatory region 434428	1198 bp proximal
Tssr94215	transcription start site region 94215	1386 bp upstream
Tssr94216	transcription start site region 94216	1406 bp upstream
Tssr98230	transcription start site region 98230	1453 bp upstream
Tssr98231	transcription start site region 98231	406 bp downstream