rs47435694 SNP Detail

Summary

• ID
  rs47435694
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33103941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGACTCG GAAGCCGCCT
  GCAGGTGAGA CCTGGAAATA CAGAGGCCGT AATAAGCTCA GCCATTCATA AGTGAGTCAA
  GGCCTCAGCA GGAACAGAGA GCAACCCCCA AGACTTGCTT CACTCTTTCT CAGAGAAGCT
  CAAGGAGTAA GGACCAGCCA CCCACAGCAG TCTCCAGTCA TTAAAACAAA ACATTCCTTA
  R
  CTATTTATTG GTTTTCCTCC CTACCTTCCA TTCCTGGTTT CCCAGATACG TTCCCCCCCC
  ACCACCACCA CCACCACCAA ATCACTCCCT GGATTCAAGT TAATCTCCAG ATTTGTTTTT
  AATGCAATTC AAGCCTAACC CAGTCTCTTC TCCTTCGCTT CTCCACATCT CTCACTCATT
  TGATGGGTCT GTTGAGTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60875845	NES15977688	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G		G	G	A		A
ss321780605	CHEV_6_33077006	CHEVERUD	SCREENING_POP	f	SNP											G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs47435694					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60875845	NES15977688	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33103941 () rs orientation: forward

Symbol	Name	Function Class
Rr628172	regulatory region 628172	71 bp distal
Rr628173	regulatory region 628173	384 bp proximal