rs47433978 SNP Detail

Summary

• ID
  rs47433978
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:136599440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACCAAGGA GTACAGTGCC
  TCCCCCAAAT ACTTTCTGGA CAGTCGCTGG CTGGCAAATA GCACTGACAG TTAAATAAAA
  TCTAACCTAT TAGAATCAAG GCAACTCCAC GTCAATCCAT AATGTCCTTA GACACTTCTC
  ATTCTCCTGT GTAGCATTGT TTCCTGATGC TGATAGCTGC TTCTCACATG CTGGCTATGT
  Y
  GCCTCTTTGT GCGTAGTTCC GATGTGACAA GCCAGAGACT CGGGCACAGA AGGGGGGGTA
  CTCCGCAGTC TTTGAGACTT CTCTGGATCT TTAGCTCTGA TCTCTTGCTG TGGGTAAGCC
  ACGGTCCTTC AGGAAGAGGG TAGAACTGTT TTCATTCAGG GAACCTTTTC ATCAAGCAGA
  ATTCCTCTCG AGAGAAAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135937499	ENSMUSSNP2650584	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs47433978					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:136599440 () rs orientation: forward

Symbol	Name	Function Class
Ppp3ca	protein phosphatase 3, catalytic subunit, alpha isoform	Intron
Rr585894	regulatory region 585894	within coordinates
Rr585895	regulatory region 585895	1991 bp proximal