rs47431439 SNP Detail

Summary

• ID
  rs47431439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121996658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACTCTGCT GAAGCACAGA GTCTGGAGCG GATGGAGCGG
  TCTGGGCTGC GGGAGCTCCT AGCAGGACAG AACCTACACT TGTTAACACA CGTCCAGGGG
  R
  TGTTTGGGTG CAGGCCACAG TGCTGTTTAC CCTGAAATAC CAATTCTACC ATGCTAGAGA
  GCCGAACCCA CTTGGATTAA TGTAGTCTAG GTTCTTGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135736988	ENSMUSSNP2793081	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320909565	CHEV_3_121905927	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47431439					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121996658 () rs orientation: forward

Symbol	Name	Function Class
Gm43158	predicted gene 43158	within coordinates
Gm46822	predicted gene, 46822	within coordinates
Rr584257	regulatory region 584257	229 bp distal
Rr584258	regulatory region 584258	615 bp proximal