rs47430565 SNP Detail

Summary

• ID
  rs47430565
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126404662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTTATT TCTTTTCAAA
  GTTCGTAATT TTTTATTATA AAATTTTATT TTCATTTATT TATTTTGTGT TACGTGTGGG
  CAAATGACTT TGCCTGTATA TGGAGGTTAG AGGACAGCTG GCAGCAATTC TGGATAAAGG
  TCAGGTTGTC AGGCTTGTGT GAAAGTTCCC TAATCTGCTG AGCCCTCCCA GCTGGCCCCT
  S
  CCTTTCCCCC TAACCTACCT ACTTCCTTGG CTGCCCACTC CCTCTTTCTC TCTTTCAAAC
  TGGACATTTT GGTCTCCAGT TTTACTTAAA ATTACAACAC ATCCCTGTGT TGTGGAAATT
  CCTTTGAACT CTGAAGAACT GCACCCTGCT TCGCCGAGGA AGTGAACACC AGCTGGTTAT
  TTTATAGGGT TGCATGCATC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135837046	ENSMUSSNP4704	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss320946675	CHEV_3_126313931	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47430565					SNP	C	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126404662 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm17225	predicted gene 17225			1605 bp upstream
Rr584652	regulatory region 584652			1616 bp distal
Rr584653	regulatory region 584653			1115 bp distal
Rr584654	regulatory region 584654			within coordinates
Rr584655	regulatory region 584655			464 bp proximal
Rr584656	regulatory region 584656			1685 bp proximal
Tssr35522	transcription start site region 35522			849 bp downstream