rs47426726 SNP Detail

Summary

• ID
  rs47426726
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57042839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATAATAG GAACTCTGGT
  AATTCAGAAG TGCAAATGGT TAAAGACCTT CTCTCTAGCT CCAAAAAGAG CATCCACCAT
  TGTGAAAATG ATAATTATCA AATAATCATA TATAAAAATA TAGAAATTAT ATTCAAAGAT
  GTCAAACAAT AGCTCACCCC ACAAATTGTA TCACTTCTCT TCTAAATTGC TCTTTGTTTT
  K
  GGTGTGCACC AGTGACTCCA AAGACAACTG CTAGTCCATT TGTTTAATTC TGTTGCACAG
  AGTTTAAGGC TAGATTTTGA AGAGAGTTCG CCTGACTCTT CCGAAGTTCC CATTCTGTTC
  CATCTGTAAA ATGGGAGCCT CCTTTGGAAG ATAAGTTTGT TCCTGGTGCC CTGTTACTGT
  TGGGTTATGC CGTTCAGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135198854	ENSMUSSNP5250649	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47426726					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57042839 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13195	CpG island 13195	1402 bp proximal
Gm8177	predicted gene 8177	76 bp downstream
Gm64707	predicted gene, 64707	1659 bp upstream
Rr375016	regulatory region 375016	940 bp upstream
Rr577070	regulatory region 577070	1368 bp proximal
Rr577071	regulatory region 577071	1670 bp proximal