rs47426447 SNP Detail

Summary

• ID
  rs47426447
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:58963452 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTTTCC TTTCATCTCT
  ATGTAAAAGA TGGTTTACTA CATACCTTAC AATAGACTGT CTTCCTTGAC TCCATAGATC
  CTGGAGATTC CCTGGTAGTC TTACGACTTC TTAGGCTTTT GTTGTGTAGG TTTACTGTTG
  TCTGTTGGGA TACTCACTCA TTAATAGATG TAGATGTTTG TGTTATGTCC AGTTTTCTTG
  M
  TATGGTTTAC TCAGTATTCC AGTGAGTAAA CATGTATTCG GTACTTGTCA AAATATGCTT
  TTTTTTTTTG TTGTTAACAC AGCATGGATT TATTTTTAAA CAATTGTTTA GTAAACATAC
  ATATTTACTG TTTATTAAAC CAGAAAGCAA ACTTACATCC TAAAGAGATA GATATGTTGC
  ATATGAGCAA TCATTTATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
ss60415559	NES15911220	PERLEGEN	MM_PANEL2	f	SNP	A	A		A	C		A	C
ss135211466	ENSMUSSNP2052971	ENSEMBL	ENSEMBL_Sanger	f	SNP			A			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	DBA/2J	KK/HlJ	MOLF/EiJ	MSM/Ms	NZW/LacJ	PWD/PhJ
rs47426447					SNP	A	A	A	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60415559	NES15911220	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58963452 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Med12l	mediator complex subunit 12-like			Intron
				Noncoding-Transcript-Variant
Rr577300	regulatory region 577300			868 bp distal