rs47426395 SNP Detail

Summary

• ID
  rs47426395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151808586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTGGTCGG AGCACACACA
  GCAGGAAGTA GCTGGCCCAT TAGCTAAGTT TAGTGGACAT ATCCGGAATA CAGCATGACC
  TTATAGCTAA GTGTAAACCA ATACAGTAAA TACTTATAGT GTCAGCATTA AATAGTATGG
  ATTTTTTTTC TTTAAGAAAA AGAAAGAAAA GGACGCCATT CCTAAGCTCC GAACTACCTC
  R
  ATAGGACAAA GTTGTAGCAT AAGTGATCAG ACAGTCGTTT TAAAGGGCGT GACAAGTACA
  CAAGCTGGAA GCCTTCAGAA GGGCGTGATT TAAGAACTGC GTTTCCAAAG GTGGAGAGGT
  GTTAGACACA CAGGAGACAC ACCTCGGGTA GCGGACAATA TACATGAGAA TATGTGAAGT
  TCGACAGAAC ATGCTATGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136100766	ENSMUSSNP1037412	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss321028023	CHEV_3_151765913	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47426395					SNP	G	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151808586 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Gm31881	predicted gene, 31881			within coordinates
Gm40179	predicted gene, 40179			1112 bp downstream
Rr587451	regulatory region 587451			1278 bp distal
Rr587452	regulatory region 587452			1850 bp proximal