rs47425881 SNP Detail

Summary

• ID
  rs47425881
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148252829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGCT CTTACCCACT GAGCCATCTC
  T
  CCAGCCCCCA CGTTCATTCT TAACC                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147994846	ENSMUSSNP5794531	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs47425881					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148252829 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15297	CpG island 15297	1384 bp distal
Cpgi15298	CpG island 15298	1304 bp proximal
Fbxo2	F-box protein 2	1948 bp downstream
Gm68449	predicted gene, 68449	within coordinates
Rr604611	regulatory region 604611	1104 bp distal
Rr604612	regulatory region 604612	within coordinates
Rr604613	regulatory region 604613	99 bp distal
Rr604614	regulatory region 604614	105 bp proximal
Tssr44601	transcription start site region 44601	1999 bp upstream