rs47425588 SNP Detail

Summary

• ID
  rs47425588
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148942474 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA GCAGGTTGTG GGAACGAGGG
  C
  CCTAATGGAT GTGGCTAGTA TACGG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148021617	ENSMUSSNP391572	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321423418	CHEV_4_148232126	CHEVERUD	SCREENING_POP	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs47425588					SNP	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148942474 () rs orientation: forward

Symbol	Name	Function Class
Casz1	castor zinc finger 1	Intron
Rr1824	regulatory region 1824	1454 bp upstream
Rr407036	regulatory region 407036	within coordinates
Rr604775	regulatory region 604775	within coordinates
Rr604776	regulatory region 604776	1232 bp proximal