rs47423726 SNP Detail

Summary

• ID
  rs47423726
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:6214939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGATTTG TGTGTGGCTC
  TCAGTGGTTT TCGAATCCAG TTCAGATATA TCATAAACAA GGACAAAGTT GAGCCTGGTA
  TGGTCATATT TCTTTATCCC TGCCCTTGGG AAGAAGAGGC AATGGAATCT CCATGCCACC
  CTGATATACA CAGCAAACTC CAGATCAGCC AAGGCTACTT AGTAAGACTC AGCCAAAAAA
  M
  GAAAAAGAAA AAAGACAAAA GACATAGAGA GTAACTGCCC AGATAACAGT TCAAAGTGAA
  GTCTCTCCAA GCAACTGGTC TATCTTTGTT TTGGCAGCTA GACAATGCTG TCACCTGTGC
  CAAGCACACG TTTGGTTTCT ATTAATCTAA GTTCATCTTA CTTTCTCGTT ATTTGTTTGT
  TGTTGCTGTT GTTGTTGAAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss132941791	ENSMUSSNP5063093	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		C
ss321731365	CHEV_6_6164939	CHEVERUD	SCREENING_POP	f	SNP			A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs47423726					SNP	A	A	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:6214939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17135	CpG island 17135	1721 bp proximal
Rr378879	regulatory region 378879	1480 bp downstream
Rr626224	regulatory region 626224	1674 bp distal
Rr626225	regulatory region 626225	1263 bp proximal
Slc25a13	solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 13	Intron
Tssr59765	transcription start site region 59765	411 bp downstream