rs47423087 SNP Detail

Summary

• ID
  rs47423087
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:127274574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTTGGGCC TTTCTCAATA
  CATTGGGGCT TTGATGCATT CCAGAACGGT TTCCGTGTCT TTATTCGCAC AAGGCCCTCG
  TCTCTCTTTA CACCCCCCCC CCCATTTGGT TATTAGGAAG AGGTCCCCTC GAGACCCTCA
  AATAACTGGA CCTGCTGGAT GGGTCAGGCA AATGTCTATA TTGTTCTTAA TTTTAATAAG
  Y
  TTGTGAGGGT TTCCTCTACA TCGGTTAACT TCGATGCTGC GTCTGTTTTT GGGAGCTGCC
  ATCTGAAAGA TACTATGTAA AAAGCTGGAA TCCTCTGTAT TTTCACTGGT ATCATGTGCT
  AGTTCTGTGA TGATGGATGG ACTCTGGACT GCTAACGCTG GTGCCCACAG AGGACTGGCA
  AAGCCACTCC AGCTCTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61079337	NES16587411	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T	C	C	C	C	C	C	C
ss135864477	ENSMUSSNP3210648	ENSEMBL	ENSEMBL_Sanger	f	SNP		T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47423087					SNP	T	T	T	C	T	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61079337	NES16587411	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127274574 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	Intron
Gm42525	predicted gene 42525	within coordinates
Gm43355	predicted gene 43355	within coordinates
Gm54939	predicted gene, 54939	195 bp upstream