rs47418728 SNP Detail

Summary

• ID
  rs47418728
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57600385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATACGGG CTTCAGTAGG
  GTGCACCAGT GTACAGCAAA GCAAATAAAG TTGATTTTAT TGAATGAGGT GGTCCTGAAA
  ATTCTCTGTA AAACGTCTGC ATGGAAGCAT TCTAGTTTCC ATAACAACTT TGTGTACTTG
  TTCTCTGGCA GTGTGTCCAA TCCTGCCATG GGTTTACAGA ACAATACCCA TTTGTACCAG
  R
  AAAATGAAAG TGGCCTTTCC CTTCCCATTC TTGCATAATA AAATCTGCCT CATAGCAACA
  CAATAGAAAT GATATTTCTT TCAGTCTTTG TGCTACTAAG AACAATTTGC TGTTGTGATC
  TCTTTCTACC CCTCTTGGCC TCAATGGGAA TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTGAAAATAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60414468	NES15915189	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47418728					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60414468	NES15915189	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57600385 () rs orientation: forward

Symbol	Name	Function Class
Ankub1	ankyrin repeat and ubiquitin domain containing 1	427 bp upstream
Rr577155	regulatory region 577155	836 bp distal
Tssr33337	transcription start site region 33337	415 bp upstream