rs47417909 SNP Detail

Summary

• ID
  rs47417909
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:106487164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATA GCTAAGCCTG GGTATGGAGA
  Y
  GCACCCCTAT AGTCCTAGCA GGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147169477	ENSMUSSNP1995505	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs47417909					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:106487164 () rs orientation: forward

Symbol	Name	Function Class
Rr398365	regulatory region 398365	1029 bp upstream
Rr596781	regulatory region 596781	284 bp distal
Rr596782	regulatory region 596782	334 bp proximal
Rr596783	regulatory region 596783	1158 bp proximal
Ttc22	tetratricopeptide repeat domain 22	Intron