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rs47414594 SNP Detail
Summary
  • ID
    rs47414594
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr6:25708168 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCTACAAAT TGACTATATT
    AATAAAATGG TTACCTTTGC AAAAATATTG CCTTCTTCAA CTACATTCTG ATGTGTTAGT
    GTTGTGTGTC ATACTTATAG AGCCTTTGAA GTTTACATTG TTGAAAACCC CTGTCACCAA
    TCTCCAAGTA GAAGCACTAT GTTATTCTTT TTAGCAAGTC TATGGCATTT CTAAGTTTCT
    R
    CAATGAGGTT AAAATGAAAA ATAAAAATTT AAAAAAACAA GTCAATAGCA ACTTGGGATA
    GAATGAACTG CATAATTTGT ATTGTAGATG GCTTGCTTCA GACATAAATA AAATCTGTAA
    ACAGATTATC ATATTGAAAT GATAGCATCA CATGATATGT TTCTAACATT TATGAAATAA
    TCAGGAAAGG GTTTTACAAT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60873600 NES15975964 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs47414594 SNP A A A A A A G A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60873600 NES15975964 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:25708168 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr627304 regulatory region 627304 355 bp distal
Rr627305 regulatory region 627305 1255 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory