rs47414594 SNP Detail

Summary

• ID
  rs47414594
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25708168 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACAAAT TGACTATATT
  AATAAAATGG TTACCTTTGC AAAAATATTG CCTTCTTCAA CTACATTCTG ATGTGTTAGT
  GTTGTGTGTC ATACTTATAG AGCCTTTGAA GTTTACATTG TTGAAAACCC CTGTCACCAA
  TCTCCAAGTA GAAGCACTAT GTTATTCTTT TTAGCAAGTC TATGGCATTT CTAAGTTTCT
  R
  CAATGAGGTT AAAATGAAAA ATAAAAATTT AAAAAAACAA GTCAATAGCA ACTTGGGATA
  GAATGAACTG CATAATTTGT ATTGTAGATG GCTTGCTTCA GACATAAATA AAATCTGTAA
  ACAGATTATC ATATTGAAAT GATAGCATCA CATGATATGT TTCTAACATT TATGAAATAA
  TCAGGAAAGG GTTTTACAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60873600	NES15975964	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47414594					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60873600	NES15975964	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25708168 () rs orientation: forward

Symbol	Name	Function Class
Rr627304	regulatory region 627304	355 bp distal
Rr627305	regulatory region 627305	1255 bp proximal