rs47412999 SNP Detail

Summary

• ID
  rs47412999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79287272 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATTAACAT TTTGGTATGT
  TTAAGAAACC ATGTGAGAAA GATGTTTGAT AAACAAAGCG CCTCAGGGAA AATTGCAAAA
  CAAATTTTCT AACACTGGTT TTTGGTACAG TATGAATCTC AGAATCCAAT TAATTAAAAA
  ACATACTAAA GTCTCTAAAT TGAGCTACTC TTAAGTTCCC ATTTCTACAT GCACCAAAGC
  R
  TAGGGATCTA TATTCCAAAT TCTTGGTTCC TCTTTGGCAT TCCTAGGATT ATTTACGGTC
  ACTGTGGTGT CCTCTGTGTT CTAGCAGAGA GCCACACTGG AGAAATCGCA ACTGGCAGTC
  AATGTTTAAC TGGTACTCCA CCTGGACATT CCATTCTGTT TCAAGCTTTG TTCTTCAATA
  ATTGATTAGA GGAGACACGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135371744	ENSMUSSNP1258239	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs47412999					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79287272 () rs orientation: forward

Symbol	Name	Function Class
Rr578508	regulatory region 578508	1537 bp distal
Rr578509	regulatory region 578509	246 bp distal
Rr578510	regulatory region 578510	4 bp proximal
Rr578511	regulatory region 578511	1473 bp proximal
Spmip2	sperm microtubule inner protein 2	Intron