rs47411738 SNP Detail

Summary

• ID
  rs47411738
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116123743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCACCTACT ACTCCATGCA GACTACCCTT CTAGCATACT
  TCCGTTTGCT CTCAAAGTAG GAGAGATGGC AAGACAACCA AAGGAAACCT TTCTTCCCGT
  S
  TGTCAGCACT TCAGCCAGAG CTCCCATCTC GGCTTGGCAT GCCTTGAACC GGCCAGATGT
  CTTCCCTGAC AGCAGAGTCT CTGGTGCATT CCCTTCAGAG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60437508	NES15945734	PERLEGEN	MM_PANEL2	f	SNP	C	G	C
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs47411738					SNP	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437508	NES15945734	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116123743 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr375619	regulatory region 375619			within coordinates
Rr397962	regulatory region 397962			1892 bp upstream
Rr583694	regulatory region 583694			208 bp distal
Rr583695	regulatory region 583695			1777 bp proximal
Rr583696	regulatory region 583696			1903 bp proximal