rs47411701 SNP Detail

Summary

• ID
  rs47411701
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121889003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACAGGAAAC CAGGAGAGCT AAACGTTGGG AAGTTATTAG
  TCAAGTGATG GTGACTTTCA TTGAAACCAG CTGGGTAGAA ACCATTGCCC TGGTGGCTTC
  S
  CAGGGCATTT GCCCTGGTCC TTGTGAGTCC TCATTCTTCA ACCTCAGCTT TTTATTCATT
  TCAATACTCT ATCTATCTAT CTATCTATCT ATCTATCTA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135734857	ENSMUSSNP1809053	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss320908303	CHEV_3_121798272	CHEVERUD	SCREENING_POP	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs47411701					SNP	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121889003 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Rr584229	regulatory region 584229			200 bp distal
Rr584230	regulatory region 584230			1494 bp proximal