rs47411457 SNP Detail

Summary

• ID
  rs47411457
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:109505991 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTGGAGGGGG TTGTTATACT GGCTGTTCAA AGCTGATGCT
  TGTCTGACAA CCGTCTTGTA TTCCATCCTT TGCTTTACTG TATGGTGTGT GAGCATATTG
  T
  ATGATTTATA TGTGGGCATA TAATTGACAT CCGCAAGGGG GTTAATTTCA ATCTAAAAAC
  AATAATGTTA TTAGTTTGGG GCTGGGGTGG AGAGGGTAAG A                    
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147203236	ENSMUSSNP4692633	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47411457					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:109505991 () rs orientation: forward

Symbol	Name	Function Class
Bdnf	brain derived neurotrophic factor	Intron
Cpgi12032	CpG island 12032	1178 bp distal
Cpgi12033	CpG island 12033	373 bp proximal
Cpgi12034	CpG island 12034	1496 bp proximal
Gm20638	predicted gene 20638	1553 bp downstream
Gm45346	predicted gene 45346	within coordinates
Rr373669	regulatory region 373669	1417 bp upstream
Rr562477	regulatory region 562477	936 bp distal
Rr562478	regulatory region 562478	643 bp distal
Rr562479	regulatory region 562479	542 bp distal
Rr562480	regulatory region 562480	within coordinates
Rr562481	regulatory region 562481	896 bp proximal
Rr562482	regulatory region 562482	1397 bp proximal