rs47409288 SNP Detail

Summary

• ID
  rs47409288
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:10929951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTGAGA CATTGTTCAC
  TGGCCAGCAT ATGTTCTGAA TTGGCCATCA GGTTTCCTCT GTTACAACCA TAAAGGGAAT
  GCTGAGGATA AAGTTAATGA AGGAAAATTG TCGATATAAT GATTAACACA AGTTTGTGTT
  AGTAAGACAA AGTATAATCC TACTGGTGGC TGGACCATGA TCTGGGGCTC CGTAGAAGGG
  Y
  AGGGTAACTG TGTAACTAAC CAGCTGTTTG TGACCTCAAA CTCCTGCACA AGAGCACCTG
  GAAGCTTTGT AAGAGAAACC AAAGCCAGTA TCTTAACTGA TAATTTAAAA AAGAAATAGA
  ATCATATTGA GTCCCTTTTA TAGGATTGCC CAGCTACATC CCCAAGACAT CACCCAAGTA
  TCCTGAATGA TTTCCCAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146008999	ENSMUSSNP2715298	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47409288					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:10929951 () rs orientation: forward

Symbol	Name	Function Class
Rr588827	regulatory region 588827	1124 bp proximal
Rr588828	regulatory region 588828	1997 bp proximal