rs47406958 SNP Detail

Summary

• ID
  rs47406958
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:83994553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAGCAA TCCACAGCAA
  TTCTGCTATG AGAAAACTGG CTGCCAAGGG AGAGGAGCAT AGTCAGAGAG AGTAAGAGAA
  GGTCCTAGCA GCCAAAGAAG GTTCTGGATT CTCCTTCCTA CTTGTCTTTC ACCATGCCCC
  ACTCCAGTGA GGATTGCTGG CCCTCGCAGG GGCCTTCCTC TTCTTGAGAG CATGTCCCAC
  M
  GTGCCTAGAG TTGCAGCTGC TGCCATCTGC TGTCTGTGTT GTCTGATGTG GCATCACCAG
  CTAGAGCTGA CCAATGAGGA GTGTGGAGTT CAATGACCTC TTAGTGAACT GTTTAGAAGA
  CATTTATAGA CAGCCCCATG CCATGTGCAG AACCCTGTTT CAGGTACTAC GAAGGTTACA
  GTAGCTAAGC AAAGCTCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60905571	NES15954349	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs47406958					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60905571	NES15954349	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83994553 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17623	CpG island 17623	1374 bp proximal
Dysf	dysferlin	Intron
Rr632974	regulatory region 632974	1859 bp distal
Rr632975	regulatory region 632975	within coordinates
Rr632976	regulatory region 632976	17 bp proximal
Rr632977	regulatory region 632977	1350 bp proximal
Rr632978	regulatory region 632978	1462 bp proximal
Tssr1912	transcription start site region 1912	1823 bp upstream
Tssr57398	transcription start site region 57398	1775 bp upstream
Tssr57399	transcription start site region 57399	1793 bp upstream