rs47404548 SNP Detail

Summary

• ID
  rs47404548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:27158188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCCTAT GAAGGGTTTC
  CCCTTTAAAT CCATAAATCT AGACTGAAAA AGATCAATGA CCTCATTCTT CAGGCACTGA
  GAAGCCACAA GTTAGCATGA CCAGGCCTGT AACTGCAGAA CTGTGAATAC CATCTTTTAA
  AGTACAAGGA GAAAGCCTGA TAAAACTCAG AACTGACTGA AATGCCAAAC TACAAGCAAA
  Y
  TATTAAACAA TATGTCCTAC AATTACAATG GCTATTTATT TTAAAAGGCT ATTTAAAATA
  AAACAAAAGT TAACTATGTA TGCCTATTTT GCTCTCCACC ATTAGCAGCC AAACAGCTTA
  TTTTGCTAAA GCTTTCTTAG TTTCTTCACG TTTCTTCACA CTTGGGGCCG AAGATGTCGC
  CCAGGCATTA ACTGATACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134702077	ENSMUSSNP5155228	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47404548					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:27158188 () rs orientation: forward

Symbol	Name	Function Class
Ect2	ect2 oncogene	Intron
Rr574344	regulatory region 574344	683 bp distal