rs47403799 SNP Detail

Summary

• ID
  rs47403799
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:142440084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACATAGAAA GTAAAATAAT
  TAAACCAGGC CTAGCAGAGC AGAGAGCCAT CTGAAGGCAT AAATCCTCAC GTGCTTTGAG
  CCACCATTGA TTCAGTCCAC AGACATTTGC AGCTAGCCAT ATAACATAAC TCATTCCGTT
  TAATCTTCAT GGTCACATCC TAACTCCATA TTATTATACC AACCTAGGAT GTAGAAATTT
  S
  AGCCCCAGAA GAATTAGTGG GGAGGTTGTT TAAGGTCATA TAGTTATGGG ACAAGAGTTG
  GAGGCAAGGT CCATTGGTAT ACCCTTTCTT CATGCTGTCT CCACGTGAGG CACGGAAGCC
  TTTTGAAGTC CTCAACTGTC AAGAGTAGGT CTCTGCCTTA GGAATATGGC TGAGCCAGTA
  TGCAAAGACA AACCCATCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147736763	ENSMUSSNP5390239	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C	G
ss320531947	CHEV_2_142423900	CHEVERUD	SCREENING_POP	f	SNP				G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47403799					SNP	G	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:142440084 () rs orientation: forward

Symbol	Name	Function Class
Rr566224	regulatory region 566224	948 bp proximal