rs47401648 SNP Detail

Summary

• ID
  rs47401648
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185415433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACAC ACACACACAC
  ACACGCACAC GCACACGCAC ATGCACACTC GCGCACACAC ACACACACAC ACACACACAC
  GCACGCACGC ACACACGCTC TCACACACAC AGAGCACACA CAGAAAGGAT GCTCTCTTGT
  AGAGTAACCA GAGTTCTGGC TGAATCAGTG GAGGATTTAG AACAAAACTC GTAGTTGGCC
  Y
  AGGACCAGCC AGAGTCAAGC TCCCGGGCCT CCCAGGTGGT GTGGCCAGTC ACTCCTGAGA
  GGGTAGAAGA AGACAGGGAT GCCCTGGTGT TGGGATTCAG AGATGTGCAC TGAGGAGCTC
  TGCTTTCCCA TTTATTGTTT AATCTCCCAG GCATGTGTTT CTTCATTTGT AGGGTGGCAA
  TTCTTATATT TGAGTTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146440025	ENSMUSSNP1201622	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320178614	CHEV_1_187507115	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47401648					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185415433 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	676 bp distal
Rr425421	regulatory region 425421	1128 bp distal
Rr425422	regulatory region 425422	1562 bp proximal
Rr425423	regulatory region 425423	1750 bp proximal