rs47398487 SNP Detail

Summary

• ID
  rs47398487
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:21568102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTTTGTA TAGCACTTAC
  TTCACTGACT GTCTCATTCC CTAAGTCTAA TTTTGTGCCC TCCCCAGCCT TGAGGGGCTG
  GATCAGACAG ACCTTGTTTG CCCCAGTCAG CTAGCTCACT TAGGGTGGAG TCTTCTGACC
  TAGGGAAAGT GTATTGTCCT GCCACATCTG CAACTTCCAG CAAGAAGCCA CTACATGCTG
  R
  GCAGCTGAGC TTTCTGACAA AGCAACGAGA TCCAGACATG TTTCTCCCCT TTAAAAATTC
  AGACCTTAGA ATTAATGTTG AGCCTTGATC AGAGAACTTT GTCTTGTCTT GTTATTTCTC
  TCCACGTCCT TCCCATCCAT CCCCAGCTTT CCTTTCAGGA GCCTAGTAAC CCATGGCCAC
  TGGTGGCTAC ACAATTTAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss146831224	ENSMUSSNP1388575	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss325553192	CHEV_18_21593546	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs47398487					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:21568102 () rs orientation: forward

Symbol	Name	Function Class
D18Mit68	DNA segment, Chr 18, Massachusetts Institute of Technology 68	580 bp proximal
Rr393394	regulatory region 393394	within coordinates