rs47396270 SNP Detail

Summary

• ID
  rs47396270
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:121079615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGTGACAC CAAATGGGAA CCAAGTGCTC CAATGCCCGA
  GACTACGGGG AAACGTTTCT CGTCCAAACC GCTATACCAG TCTTTCTTGA TTCTCCTTCA
  R
  TTCCCAAGAC TTTTCCATCT CCTTTCTTTG ATTGCTCAGT CTCCTCTCCT CCACTAAGTG
  GCAGCAACCC CAGACAGACT CTTCTTTATC CAGGACTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135717555	ENSMUSSNP6114524	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs47396270					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121079615 () rs orientation: forward

Symbol	Name	Function Class
Rr375663	regulatory region 375663	1761 bp upstream
Rr584034	regulatory region 584034	299 bp distal
Rr584035	regulatory region 584035	512 bp proximal
Rr584036	regulatory region 584036	1065 bp proximal
Rr584037	regulatory region 584037	1398 bp proximal