rs47394419 SNP Detail

Summary

• ID
  rs47394419
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:158111076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCCACCCCC AAGATCCCAA AGACTCACTG CGCCTGCCCA
  TCACCCAGGG CCTTTGCACT GCCTTTCACC TCTACCCAGG CTCCTCGGTA GCAGATATGG
  M
  CACAGCTCTC CCTGCTTCCT TCCAGTTCTT GATCAAATAG GCCTTCTTCC TAGAGATGTC
  TTCCCAGAGA TGCTGTCCCT GGCCATTCTT GCTGAAACA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148112648	ENSMUSSNP2269173	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320588359	CHEV_2_158094892	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs47394419					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:158111076 () rs orientation: forward

Symbol	Name	Function Class
Bpi	bactericidal permeablility increasing protein	Intron
Rr568716	regulatory region 568716	1303 bp proximal