rs47393028 SNP Detail

Summary

• ID
  rs47393028
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145122472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATGATTGG CTCCTGGTTT
  GTTTGTTTTT TTTTCTTTAG CATAAGATTA AGACATACAA GGCATGATAG TAATACAAGA
  AAGAAAGGAT CATGTGGCTG GCTATTATCT CCTCGTGGCA AACGATGTCT TCACTTTTCA
  AGGGAGCTTT CCGGGCTTCT CTGCACTGTG TTTTAAAGGC ACTGTCCTAC CCTTGGGCTC
  Y
  GAGGTGTCAC AGGACCACTC AAGTGCTACT ATAGAAGTCC AAAGTACAGT TATGAGAGGA
  GTGCAGAGAC TTGTCAGTGC CTGGTGAAAA AGGAAGTCTC GTGAGGATAT CTTCTTCCCT
  CCGTATCTTC TCCCCTTCTT TTCTTATTTA TCTTGAGACT TGAAACAAAC ACGTAAAAGG
  TCACCGATTT GTCTGTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61093865	NES16613564	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs47393028					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61093865	NES16613564	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145122472 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
9530034A14Rik	RIKEN cDNA 9530034A14 gene			within coordinates
Col24a1	collagen, type XXIV, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr586779	regulatory region 586779			1197 bp proximal
Rr586780	regulatory region 586780			1317 bp proximal