rs47392373 SNP Detail

Summary

• ID
  rs47392373
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:115986099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGT TTGGACCGCA GCTGCAGGCT
  Y
  CCGTCTCAAA AAGTTTAGCA GTTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss133574485	ENSMUSSNP4109770	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321917110	CHEV_6_115959156	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47392373					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:115986099 () rs orientation: forward

Symbol	Name	Function Class
Gm53336	predicted gene, 53336	within coordinates
Rr637132	regulatory region 637132	1694 bp distal
Rr637133	regulatory region 637133	841 bp distal
Rr637134	regulatory region 637134	201 bp proximal
Rr637135	regulatory region 637135	752 bp proximal
Rr637136	regulatory region 637136	1312 bp proximal
Rr637137	regulatory region 637137	1587 bp proximal