rs47391977 SNP Detail

Summary

• ID
  rs47391977
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185415119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGCTG TTCTTTATAA
  CTAGACTTCT GAGTTCAAAA AAATATGTCT GTTAGCATAT TCAAGGAACT CCCAGGCTGG
  GGAGATGATG TAGTTCAAAC TTGTGCAGTC CCAGCGTTGT TCCTTCCTGG GAAGTACAGA
  CAGGAGGATC GCTGATGCTC AAAGGCCAGC TTGCCTGGGG AGGCTCTGTC CCAGATGCTT
  R
  GAACATAAGA ATCAACACCA GCTTGGTTGT CCTCTGACCT TCCCTTTTGT GATGGGCACA
  CATGTGCTCA CATTCACACG GGTGAATGAA CATGCATAGT CGTGCATACA CACACACACA
  CACACACACA CACACACGCA CACGCACACG CACATGCACA CTCGCGCACA CACACACACA
  CACACACACA CACGCACGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146440000	ENSMUSSNP4585692	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss320178603	CHEV_1_187506801	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs47391977					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185415119 () rs orientation: forward

Symbol	Name	Function Class
Rr425420	regulatory region 425420	362 bp distal
Rr425421	regulatory region 425421	814 bp distal
Rr425422	regulatory region 425422	1876 bp proximal