rs47389878 SNP Detail

Summary

• ID
  rs47389878
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150271575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAACAGCG ACAGTGTACT
  CATATACATA AAATAAATAA AATAATAAAT CTTTTTTTAA AAAAAATAAA GTGGTGCAAA
  AGAATAGTAA CACAAAATTT AAAAATGAAA ATTTCCAAAA TCACTTTATT ACATCTAAAT
  GCTAAAGGCT GATTTATAAC GTAGATCAAG GTGAATGGTT TTCTTTTTTC GGCGCTGGGG
  R
  TCAAACCCAA GGTTGTGACA AGCTCTCTAC CATGAGCTGC ATCTGTGGAC CCCAACTTTA
  GGTGAATGAT TGACAGGGAA TTATGAAAGG CTTGATTTCT TTGCACGTCC GTCGAAGTCT
  TTTCCCTCTC ACCCACATCC CTTTCTCTTC TGGCTAACGT AGCTCCACTT CTTCTCTCGG
  AGGAGAACTC CCTCTGGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148049625	ENSMUSSNP524015	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47389878					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150271575 () rs orientation: forward

Symbol	Name	Function Class
Car6	carbonic anhydrase 6	mRNA-UTR
Rr605217	regulatory region 605217	584 bp distal
Rr605218	regulatory region 605218	377 bp distal
Tssr40380	transcription start site region 40380	298 bp upstream
Tssr40381	transcription start site region 40381	307 bp upstream
Tssr40382	transcription start site region 40382	325 bp upstream
Tssr40383	transcription start site region 40383	339 bp upstream
Tssr44720	transcription start site region 44720	272 bp downstream