rs47389755 SNP Detail

Summary

• ID
  rs47389755
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129084858 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTACAAGAA TCGGGATGTG
  TCACAAGCAC AGTGGCTCCC CTGACTTTAC TAGTGGTGAT GTCAGGTGTC ATTTTGCAAC
  CTGTAACAGA GTCCTAAGTA ACATCTTACT TCTAAAATCC AGCATAAAGA TGAGGAAATT
  CACTGAGTTA TTTGGAAAAC AAAAAACAAA AAAACAATAA CCAAAAAACC CTACACGCCC
  Y
  ATCACAAGGA AATATTGCAT ACATCACTCT GTATGGTAGA CATTTGAAGT CATTAAAAGT
  CAAGTTACTG AGCTGGGGAG ATGGCCTGTT GTGCCATACA AGTGTGGGCC TGCACTTAGC
  ACCCCAGGAC CCCTATAGGG AAGGAAGCCA GGTATCGTAG TACATGTTAG TAATGCCGGT
  GCTCCTGTGG GGAAATGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147584206	ENSMUSSNP3914436	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs47389755					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129084858 () rs orientation: forward

Symbol	Name	Function Class
Rr373844	regulatory region 373844	within coordinates
Rr564887	regulatory region 564887	1007 bp distal
Rr564888	regulatory region 564888	87 bp distal
Rr564889	regulatory region 564889	72 bp proximal
Rr564890	regulatory region 564890	811 bp proximal
Rr564891	regulatory region 564891	1700 bp proximal
Rr564892	regulatory region 564892	1715 bp proximal